MirGeneDB ID | Dan-Mir-252-P2-v2 |
Family name |
MIR-252 (all species) |
Seed |
AAGUACU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
Dan-Mir-252-P1a
Dan-Mir-252-P1b
Dan-Mir-252-P2-v1
|
Orthologues |
Aae-Mir-252-P2
Bfl-Mir-252-P2
Bge-Mir-252-P2-v1
Bge-Mir-252-P2-v2
Bla-Mir-252-P2
Cbr-Mir-252-P2
Cel-Mir-252-P2
Cgi-Mir-252-P2
Csc-Mir-252-P2
Cte-Mir-252-P2
Dma-Mir-252-P2
Dme-Mir-252-P2-v1
Dme-Mir-252-P2-v2
Dmo-Mir-252-P2-v1
Dmo-Mir-252-P2-v2
Dpu-Mir-252-P2-v1
Dpu-Mir-252-P2-v2
Dsi-Mir-252-P2-v1
Dsi-Mir-252-P2-v2
Dya-Mir-252-P2-v1
Dya-Mir-252-P2-v2
Hme-Mir-252-P2
Isc-Mir-252-P2-v1
Isc-Mir-252-P2-v2
Lan-Mir-252-P2
Lgi-Mir-252-P2
Lpo-Mir-252-P2c
Lpo-Mir-252-P2d
Npo-Mir-252-P2
Pfl-Mir-252-P2
Pmi-Mir-252-P2
Sko-Mir-252-P2
Spu-Mir-252-P2
Tca-Mir-252-P2
Xbo-Mir-252-P2g
Xbo-Mir-252-P2h
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Dana_caf1) |
scaffold_13340: 1848690-1848754 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUACAUUACUUCCUGCGAAGUCGCUUUCCUAAGUACUAGUGCCGCAGGAGUUAGGUUCGUGUCCGCAAUACCUCCUGCUGCCCAAGUGCUUAUUAAAGCGGCGAGUUGUCCAGCAAAAUACAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUUACAUUACUUCCUGCGAA--| CC AGU C UUAGGUUCGU
GUCGCUUU UAAGUACU GC GCAGGAG \
CGGCGAAA AUUCGUGA CG CGUCCUC G
GAACAUAAAACGACCUGUUGAG^ UU ACC U CAUAACGCCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dan-Mir-252-P2-v2_5p |
mirBase accession | None |
Sequence |
0- UAAGUACUAGUGCCGCAGGAGU -22
Get sequence
|
Star sequence |
Dan-Mir-252-P2-v2_3p* |
mirBase accession | None |
Sequence |
43- UCCUGCUGCCCAAGUGCUUAUU -65
Get sequence
|