MirGeneDB 3.0

MirGeneDB ID

Dma-Mir-252-P2-v2

Family name MIR-252 (all species)
Seed AAGUACU
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-252-P1  Dma-Mir-252-P2-v1 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(DMA_ASM399081)
NC_046174.1: 8936496-8936561 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GACUGAAGACAAAUAUUCCUACCCCGUUCCUAAGUACUCGUGCCGCAGGAGAGAUGUAUUAAUCUGCAAGUUCCUCCUGCUGCUCAAGUUCUUAACUAAUGGUUAUGGAAAAACCAUCGCAUUUAA
Get precursor sequence
Structure
        10         20        30         40        50        60  
GACUGAAGACAAAUAUU-  UACC     CC-|   U   CGU  C       AGAUGUAUUA 
                  CC    CCGUU   UAAG ACU   GC GCAGGAG          A
                  GG    GGUAA   AUUC UGA   CG CGUCCUC          U
AAUUUACGCUACCAAAAA  UAUU     UCA^   U   ACU  U       CUUGAACGUC 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-252-P2-v2_5p

mirBase accessionNone
Sequence
0- UAAGUACUCGUGCCGCAGGAG -21
Get sequence
Star sequence

Dma-Mir-252-P2-v2_3p*

mirBase accessionNone
Sequence
45- CCUGCUGCUCAAGUUCUUAAC -66
Get sequence