MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-252-P2-v1

Family name MIR-252 (all species)
Seed UAAGUAC
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-252a
Paralogues Dpu-Mir-252-P1  Dpu-Mir-252-P2-v2 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_285: 66066-66134 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P2-v1)		 Mir-252-P2-v1 DAPPUscaffold_285: 66066-66134 [+] Ensembl
Mir-252-P2-v2 DAPPUscaffold_285: 66067-66133 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUAUUUAAAGAUGAUUCCUACCCCGUUCCUAAGUACUCGUGCCGCAGGAGAGAUGUAUUAAUCUGCAAGUUCCUCCUGCUGCUCAAGUUCUUAACCAAUGGGUGGGAGAAACCUCCAAAUUGUAAUG
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Structure
        10           20        30        40        50        60   
GCUUAUUUAAAGAUGAU---|       CGUUCC    U   CGU  C       AGAUGUAUUA 
                    UCCUACCC      UAAG ACU   GC GCAGGAG          A
                    AGGGUGGG      AUUC UGA   CG CGUCCUC          U
GUAAUGUUAAACCUCCAAAG^       UAACCA    U   ACU  U       CUUGAACGUC 
       120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Dpu-Mir-252-P2-v1_5p
mirBase accessionMIMAT0012647
Sequence 
0- CUAAGUACUCGUGCCGCAGGAG -22
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Star sequence

Dpu-Mir-252-P2-v1_3p*
mirBase accessionNone
Sequence 
46- CCUGCUGCUCAAGUUCUUAACCA -69
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