Mir-252-P1b

MirGeneDB ID

Dan-Mir-252-P1b

Family name

MIR-252 (all species)

Seed

UAAGUAG

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

Paralogues

Dan-Mir-252-P1a Dan-Mir-252-P2-v1 Dan-Mir-252-P2-v2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cbr-Mir-252-P1 Cel-Mir-252-P1 Cte-Mir-252-P1 Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1b Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1b Dya-Mir-252-P1b Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1

Node of Origin (locus)

Drosophila

Node of Origin (family)

Bilateria

Genome context
(Dana_caf1)

scaffold_12943: 1815419-1815480 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUAAAUAUCUGUGCAAACUAAAUCAUGUGUUUAAGUAGGCAAUACAUGGGCGACUAAAUAAAAUAUACUCGCAAUGUAUAGCCUACAUAACUAGUUGAUUUUUGCAAGCAUCCAUUACAAAU

Get precursor sequence

Structure

        10          20         30        40        50        60 
AUAAAUAUCUGUGCAAACU--      UGU-|  UAA      A      GG    CUAAAUA 
                     AAAUCA    GUU   GUAGGC AUACAU  GCGA       \
                     UUUAGU    CAA   CAUCCG UAUGUA  CGCU       A
UAAACAUUACCUACGAACGUU      UGAU^  UA-      A      A-    CAUAUAA 
120       110       100        90         80         70

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe

Mature sequence

Dan-Mir-252-P1b_5p

mirBase accession

None

Sequence

0- UUAAGUAGGCAAUACAUGGGCGA -23

Get sequence

Star sequence

Dan-Mir-252-P1b_3p*

mirBase accession

None

Sequence

40- GCAAUGUAUAGCCUACAUAACU -62

Get sequence