MirGeneDB ID | Bla-Mir-252-P1-v2 |
Family name |
MIR-252 (all species) |
Seed |
GCUAAGU |
Species |
European lancelet (Branchiostoma lanceolatum) |
MiRBase ID |
|
Paralogues |
Bla-Mir-252-P1-v1
Bla-Mir-252-P2
|
Orthologues |
Asu-Mir-252-P1
Bfl-Mir-252-P1-v1
Bfl-Mir-252-P1-v2
Bge-Mir-252-P1
Cbr-Mir-252-P1
Cel-Mir-252-P1
Cgi-Mir-252-P1
Csc-Mir-252-P1
Cte-Mir-252-P1
Dan-Mir-252-P1a
Dan-Mir-252-P1b
Dma-Mir-252-P1-v1
Dma-Mir-252-P1-v2
Dme-Mir-252-P1a
Dme-Mir-252-P1b
Dmo-Mir-252-P1a
Dmo-Mir-252-P1b
Dpu-Mir-252-P1
Dsi-Mir-252-P1a
Dsi-Mir-252-P1b
Dya-Mir-252-P1a
Dya-Mir-252-P1b
Esc-Mir-252-P1
Hme-Mir-252-P1
Isc-Mir-252-P1
Lan-Mir-252-P1
Lgi-Mir-252-P1
Lpo-Mir-252-P1c
Lpo-Mir-252-P1e
Lpo-Mir-252-P1f
Npo-Mir-252-P1
Obi-Mir-252-P1
Ovu-Mir-252-P1
Pfl-Mir-252-P1
Pmi-Mir-252-P1
Sko-Mir-252-P1
Spu-Mir-252-P1
Tca-Mir-252-P1
Xbo-Mir-252-P1g
Xbo-Mir-252-P1h
Xbo-Mir-252-P1i
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (BraLan2) |
Sc0000329: 50650-50718 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUAGUUUGAGAUGAAAGCGACUGUCUCUGUGCUAAGUAGUACUGCCGCAGGGAGUGCUGCGGACUGAUUCUAUCCCCUGCGCAGUCCUACUUACAACAGGGAACAUUUCUAAUGCUUCAAACUGCACC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUAGUUUGAGAUGAAAGCGAC- -| GC U C AGUGCUGCGG
UG UCUCUGU UAAGUAG ACUGC GCAGGG A
AC AGGGACA AUUCAUC UGACG CGUCCC C
CCACGUCAAACUUCGUAAUCUUU A^ AC C - CUAUCUUAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Bla-Mir-252-P1-v2_5p |
mirBase accession | None |
Sequence |
0- UGCUAAGUAGUACUGCCGCAGGGA -24
Get sequence
|
Star sequence |
Bla-Mir-252-P1-v2_3p* |
mirBase accession | None |
Sequence |
46- CCUGCGCAGUCCUACUUACAACA -69
Get sequence
|