MirGeneDB ID | Xbo-Mir-252-P1h |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAG |
Species |
Xenoturbella (Xenoturbella bocki) |
MiRBase ID |
|
Paralogues |
Xbo-Mir-252-P1g
Xbo-Mir-252-P1i
Xbo-Mir-252-P2g
Xbo-Mir-252-P2h
|
Orthologues |
Asu-Mir-252-P1
Bfl-Mir-252-P1-v1
Bfl-Mir-252-P1-v2
Bge-Mir-252-P1
Bla-Mir-252-P1-v1
Bla-Mir-252-P1-v2
Cbr-Mir-252-P1
Cel-Mir-252-P1
Cgi-Mir-252-P1
Csc-Mir-252-P1
Cte-Mir-252-P1
Dma-Mir-252-P1-v1
Dma-Mir-252-P1-v2
Dpu-Mir-252-P1
Esc-Mir-252-P1
Hme-Mir-252-P1
Isc-Mir-252-P1
Lan-Mir-252-P1
Lgi-Mir-252-P1
Npo-Mir-252-P1
Obi-Mir-252-P1
Ovu-Mir-252-P1
Pfl-Mir-252-P1
Pmi-Mir-252-P1
Sko-Mir-252-P1
Spu-Mir-252-P1
Tca-Mir-252-P1
|
Node of Origin (locus) |
X. bocki
|
Node of Origin (family) |
Bilateria
|
Genome context (Xbocki_plus) |
3C-assembly_contig_130: 2053-2112 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGCAAUGUGAGGACUGAAUUGGCCCAGUCUAAGUAGUACUGCCGCAGGUAAUGUACUACUUGUGUUACCUGCACUCUACUGCUUAUACUAGUCCUAUUCAAAUACAACGACGUCACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUGCAAUGUGAGGACU--| U CCC C CUGCC UGUACU
GAAU GG AGU UAAGUAGUA GCAGGUAA \
CUUA CC UCA AUUCGUCAU CGUCCAUU A
UACACUGCAGCAACAUAAA^ U UGA U CUCA- GUGUUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Xbo-Mir-252-P1h_5p |
mirBase accession | None |
Sequence |
0- CUAAGUAGUACUGCCGCAGGUAA -23
Get sequence
|
Star sequence |
Xbo-Mir-252-P1h_3p* |
mirBase accession | None |
Sequence |
38- ACCUGCACUCUACUGCUUAUAC -60
Get sequence
|