Mir-252-P1

MirGeneDB ID

Cbr-Mir-252-P1

Family name

MIR-252 (all species)

Seed

UAAGUAG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-251

Paralogues

Cbr-Mir-252-P2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cel-Mir-252-P1 Csc-Mir-252-P1k Csc-Mir-252-P1l Cte-Mir-252-P1 Dan-Mir-252-P1a Dan-Mir-252-P1b Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1a Dme-Mir-252-P1b Dmo-Mir-252-P1a Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dsi-Mir-252-P1b Dya-Mir-252-P1a Dya-Mir-252-P1b Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Lpo-Mir-252-P1c Lpo-Mir-252-P1e Lpo-Mir-252-P1f Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Sro-Mir-252-P1o1 Sro-Mir-252-P1o2 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1 Xbo-Mir-252-P1g Xbo-Mir-252-P1h Xbo-Mir-252-P1i Xbo-Mir-252-P1j

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CB4)

X: 5784611-5784672 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CUAUACUGUUUUGUCCCAAAUGACAUCUCGUUAAGUAGUGGUGCCGCUCUUAUUAGAAUUAUCAAGUAAUAAGAGUUGUUCGCUACUUAACGAGAGGAAAUUUGGAAAGAUGUGUCAGUUGU

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Structure

        10          20        30        40        50        60 
CUAUACUGUUUUGUCCC--|   GACA                U  C         AGAAUU 
                   AAAU    UCUCGUUAAGUAGUGG GC GCUCUUAUU      \
                   UUUA    AGAGCAAUUCAUCGCU UG UGAGAAUAA      A
UGUUGACUGUGUAGAAAGG^   AAGG                -  U         UGAACU 
120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Mature sequence

Cbr-Mir-252-P1_5p

mirBase accession

MIMAT0000506

Sequence

0- UUAAGUAGUGGUGCCGCUCUUAUU -24

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Star sequence

Cbr-Mir-252-P1_3p*

mirBase accession

None

Sequence

39- UAAGAGUUGUUCGCUACUUAACG -62

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