MirGeneDB 2.1

MirGeneDB ID

Dme-Mir-252-P1b

Family name MIR-252 (all species)
Seed UAAGUAG
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-1002
Paralogues Dme-Mir-252-P1a  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1b  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1b  Dya-Mir-252-P1b  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1 
Node of Origin (locus) Drosophila
Node of Origin (family) Bilateria
Genome context
(Drosophila_melanogaster_BDGP6)
2L: 13747621-13747683 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P1b)
Mir-252-P1b 2L: 13747621-13747683 [-] UCSC Ensembl
Mir-252-P1a 2L: 13747761-13747824 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUAUCGGAAUUAAUUAGAAAUUAUAUAUUUAAGUAGUGGAUACAAAGGGCGAUUUGAUAUAAAAGUGUCGCAUUGUAUGACCUACUUAACUAGCUGAUUUUGUAUCCCAACAUAAUAGGUU
Get precursor sequence
Structure
        10          20        30        40        50        60  
UUGUAUCGGAAUUAAUUA--|      UA  U        UGG      AGG    UUUGAUA 
                    GAAAUUA  UA UUAAGUAG   AUACAA   GCGA       \
                    UUUUAGU  AU AAUUCAUC   UAUGUU   CGCU       U
UUGGAUAAUACAACCCUAUG^      CG  C        CAG      A--    GUGAAAA 
 120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He L3 Fe Fe La Wh
Mature sequence

Dme-Mir-252-P1b_5p

mirBase accessionMIMAT0005483
Sequence
0- UUAAGUAGUGGAUACAAAGGGCGA -24
Get sequence
Proposed targets microrna.org: MIMAT0005483
TargetScanFly: dme-miR-1002
Co-mature sequence

Dme-Mir-252-P1b_3p

mirBase accessionMIMAT0020864
Sequence
41- GCAUUGUAUGACCUACUUAACU -63
Get sequence