MirGeneDB 3.0

MirGeneDB ID

Dsi-Mir-252-P1b

Family name MIR-252 (all species)
Seed UAAGUAG
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-1002
Paralogues Dsi-Mir-252-P1a  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2 
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1b  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dme-Mir-252-P1b  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dya-Mir-252-P1b  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Mgi-Mir-252-P1  Mom-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Rph-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Tur-Mir-252-P1  War-Mir-252-P1 
Node of Origin (locus) Drosophila
Node of Origin (family) Bilateria
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2L: 13295102-13295164 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P1b)
Mir-252-P1b 2L: 13295102-13295164 [-] UCSC Ensembl
Mir-252-P1a 2L: 13295261-13295324 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUAAUCGGAAAUAUUUAGAAAUUAUAUAUUUAAGUAGUGGAUACAAAAGGCGAUUUGAUAUAAAAGUAUCGCAUUGUAUGGCCUACUUAACUAGCUGAUUUUGUAUUCCAACAUAAAAUGCU
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Structure
        10          20        30        40        50        60  
AAUAAUCGGAAAUAUUUA--|      UA  U        UGG      AAG    UUUGAUA 
                    GAAAUUA  UA UUAAGUAG   AUACAA   GCGA       \
                    UUUUAGU  AU AAUUCAUC   UAUGUU   CGCU       U
UCGUAAAAUACAACCUUAUG^      CG  C        CGG      A--    AUGAAAA 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Mature sequence

Dsi-Mir-252-P1b_5p

mirBase accessionMIMAT0012439
Sequence
0- UUAAGUAGUGGAUACAAAAGGCGA -24
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Co-mature sequence

Dsi-Mir-252-P1b_3p

mirBase accessionMIMAT0012440
Sequence
41- GCAUUGUAUGGCCUACUUAACU -63
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