MirGeneDB 2.1

MirGeneDB ID

Dsi-Mir-252-P1a

Family name MIR-252 (all species)
Seed AAGUAGU
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-968
Paralogues Dsi-Mir-252-P1b  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dme-Mir-252-P1a  Dmo-Mir-252-P1a  Dpu-Mir-252-P1  Dya-Mir-252-P1a  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1 
Node of Origin (locus) Drosophila
Node of Origin (family) Bilateria
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2L: 13295261-13295324 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P1a)
Mir-252-P1b 2L: 13295102-13295164 [-] UCSC Ensembl
Mir-252-P1a 2L: 13295261-13295324 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGAAAAAAUUGUUCAUGGAAGCUUCCUUAAGUAGUAUCCAUUAAAGGGUUGUUCUCAACAUGCAAAUCAACCGUUUGAUGUACUACUUUAGGAAUCUACAGUCAAAGUCAACAUUAAAUAG
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Structure
        10           20        30        40        50        60  
CAAAGAAAAAAUUGUUCA---| GA  C     U        UC       G     UUCUCAA 
                     UG  AG UUCCU AAGUAGUA  CAUUAAA GGUUG       C
                     AC  UC AAGGA UUCAUCAU  GUAGUUU CCAAC       A
GAUAAAUUACAACUGAAACUG^ A-  U     U        --       G     UAAACGU 
  120       110        100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Mature sequence

Dsi-Mir-252-P1a_5p

mirBase accessionMIMAT0012441
Sequence
0- UAAGUAGUAUCCAUUAAAGGGUUG -24
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Star sequence

Dsi-Mir-252-P1a_3p*

mirBase accessionMIMAT0012442
Sequence
42- ACCGUUUGAUGUACUACUUUAG -64
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