MirGeneDB ID | Asu-Mir-252-P1 |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAG |
Species |
Large roundworm (Ascaris suum) |
MiRBase ID |
asu-mir-252
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Paralogues |
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Orthologues |
Bfl-Mir-252-P1-v1
Bfl-Mir-252-P1-v2
Bge-Mir-252-P1
Bla-Mir-252-P1-v1
Bla-Mir-252-P1-v2
Cbr-Mir-252-P1
Cel-Mir-252-P1
Cgi-Mir-252-P1
Csc-Mir-252-P1
Cte-Mir-252-P1
Dan-Mir-252-P1a
Dan-Mir-252-P1b
Dma-Mir-252-P1-v1
Dma-Mir-252-P1-v2
Dme-Mir-252-P1a
Dme-Mir-252-P1b
Dmo-Mir-252-P1a
Dmo-Mir-252-P1b
Dpu-Mir-252-P1
Dsi-Mir-252-P1a
Dsi-Mir-252-P1b
Dya-Mir-252-P1a
Dya-Mir-252-P1b
Esc-Mir-252-P1
Hme-Mir-252-P1
Isc-Mir-252-P1
Lan-Mir-252-P1
Lgi-Mir-252-P1
Lpo-Mir-252-P1c
Lpo-Mir-252-P1e
Lpo-Mir-252-P1f
Npo-Mir-252-P1
Obi-Mir-252-P1
Ovu-Mir-252-P1
Pfl-Mir-252-P1
Pmi-Mir-252-P1
Sko-Mir-252-P1
Spu-Mir-252-P1
Tca-Mir-252-P1
Xbo-Mir-252-P1g
Xbo-Mir-252-P1h
Xbo-Mir-252-P1i
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
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Genome context (ASU_PRJNA80881_plustraces) |
Scaffold613: 86770-86828 [+]
|
Precursor (pre-Mir +30nt flank) |
AUGAACAAAUAACGAUAGUGUGGGACCAGCCUAAGUAGUAGUGCCGCAGGUAACAUGACUUGGGAUUACCUGCUCCCUGCUGCUUAACUUGGUACCGCUUUACGCCAUUCCUCUGCAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGAACAAAUAACGAUAGU--| G CC UGCC CAUGA
GUGG ACCAG UAAGUAGUAG GCAGGUAA C
CGCC UGGUU AUUCGUCGUC CGUCCAUU U
UAACGUCUCCUUACCGCAUUU^ A CA CCU- AGGGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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Mature sequence |
Asu-Mir-252-P1_5p |
mirBase accession | MIMAT0021509 |
Sequence |
0- CUAAGUAGUAGUGCCGCAGGUAA -23
Get sequence
|
Star sequence |
Asu-Mir-252-P1_3p* |
mirBase accession | MIMAT0021510 |
Sequence |
37- ACCUGCUCCCUGCUGCUUAACU -59
Get sequence
|