MirGeneDB 2.1

MirGeneDB ID

Asu-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-252
Paralogues
Orthologues Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold613: 86770-86828 [+]
Precursor
(pre-Mir +30nt flank)
AUGAACAAAUAACGAUAGUGUGGGACCAGCCUAAGUAGUAGUGCCGCAGGUAACAUGACUUGGGAUUACCUGCUCCCUGCUGCUUAACUUGGUACCGCUUUACGCCAUUCCUCUGCAAU
Get precursor sequence
Structure
        10          20        30        40        50         
AUGAACAAAUAACGAUAGU--|   G     CC          UGCC        CAUGA 
                     GUGG ACCAG  UAAGUAGUAG    GCAGGUAA     C
                     CGCC UGGUU  AUUCGUCGUC    CGUCCAUU     U
UAACGUCUCCUUACCGCAUUU^   A     CA          CCU-        AGGGU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-252-P1_5p

mirBase accessionMIMAT0021509
Sequence
0- CUAAGUAGUAGUGCCGCAGGUAA -23
Get sequence
Star sequence

Asu-Mir-252-P1_3p*

mirBase accessionMIMAT0021510
Sequence
37- ACCUGCUCCCUGCUGCUUAACU -59
Get sequence