Mir-252-P1

MirGeneDB ID

Asu-Mir-252-P1

Family name

MIR-252 (all species)

Seed

UAAGUAG

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-252

Paralogues

Orthologues

Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cbr-Mir-252-P1 Cel-Mir-252-P1 Cgi-Mir-252-P1 Csc-Mir-252-P1 Cte-Mir-252-P1 Dan-Mir-252-P1a Dan-Mir-252-P1b Dma-Mir-252-P1-v1 Dma-Mir-252-P1-v2 Dme-Mir-252-P1a Dme-Mir-252-P1b Dmo-Mir-252-P1a Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dsi-Mir-252-P1b Dya-Mir-252-P1a Dya-Mir-252-P1b Esc-Mir-252-P1 Hme-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lpo-Mir-252-P1c Lpo-Mir-252-P1e Lpo-Mir-252-P1f Npo-Mir-252-P1 Obi-Mir-252-P1 Ovu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Sko-Mir-252-P1 Spu-Mir-252-P1 Tca-Mir-252-P1 Xbo-Mir-252-P1g Xbo-Mir-252-P1h Xbo-Mir-252-P1i

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold613: 86770-86828 [+]

Precursor
(pre-Mir +30nt flank)

AUGAACAAAUAACGAUAGUGUGGGACCAGCCUAAGUAGUAGUGCCGCAGGUAACAUGACUUGGGAUUACCUGCUCCCUGCUGCUUAACUUGGUACCGCUUUACGCCAUUCCUCUGCAAU

Get precursor sequence

Structure

        10          20        30        40        50         
AUGAACAAAUAACGAUAGU--|   G     CC          UGCC        CAUGA 
                     GUGG ACCAG  UAAGUAGUAG    GCAGGUAA     C
                     CGCC UGGUU  AUUCGUCGUC    CGUCCAUU     U
UAACGUCUCCUUACCGCAUUU^   A     CA          CCU-        AGGGU 
       110       100        90        80         70        60