MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-252-P1-v2

Family name MIR-252 (all species)
Seed GCUAAGU
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-252b
Paralogues Bfl-Mir-252-P1-v1  Bfl-Mir-252-P2 
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Csc-Mir-252-P1k  Csc-Mir-252-P1l  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Mgi-Mir-252-P1  Mom-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Rph-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Sro-Mir-252-P1o1  Sro-Mir-252-P1o2  Tca-Mir-252-P1  Tur-Mir-252-P1  War-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P1j 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049982.1: 20093381-20093449 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-252-P1-v2)		 Mir-252-P2 NC_049982.1: 20092666-20092725 [-] UCSC
Mir-252-P1-v2 NC_049982.1: 20093381-20093449 [-] UCSC
Mir-252-P1-v1 NC_049982.1: 20093383-20093447 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGUAGUUUGAGAUGAAAGCGACUGUCUCUGUGCUAAGUAGUACUGCCGCAGGGAGUGCUGUGGACUGAUUCUAUCCCCUGCGCAGUCCUACUUACAACAGGGAACAUUUCUAAUGCUUCAAACUUCACC
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Structure
        10        20          30        40        50        60    
AGUAGUUUGAGAUGAAAGCGAC-  -|      GC       U     C      AGUGCUGUGG 
                       UG UCUCUGU  UAAGUAG ACUGC GCAGGG          A
                       AC AGGGACA  AUUCAUC UGACG CGUCCC          C
CCACUUCAAACUUCGUAAUCUUU  A^      AC       C     -      CUAUCUUAGU 
       120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-252-P1-v2_5p
mirBase accessionMIMAT0009499
Sequence 
0- UGCUAAGUAGUACUGCCGCAGGGA -24
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Star sequence

Bfl-Mir-252-P1-v2_3p* (predicted)
mirBase accessionMIMAT0019151
Sequence 
46- CCUGCGCAGUCCUACUUACAACA -69
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