MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(Ruditapes_GCA_009026015)
QUSP01004575.1: 5057-5116 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUGGAAGAAAUGUUUGAAACUUUUGUUUCAGCUGUCAUGAUGCUUUCUUGUGUUUUUUAGAUUAAGAAAGAAUUAUAACAGUUGUAAUAAAGGUUUCUUUAUCAAAGACUCAGGUAC
Get precursor sequence
Structure
        10          20        30        40        50         
AUUUUGGAAGAAAUGUUU--|           U       C     G       GUGUUU 
                    GAAACUUUUGUU CAGCUGU AUGAU CUUUCUU      U
                    CUUUGGAAAUAA GUUGACA UAUUA GAAAGAA      U
CAUGGACUCAGAAACUAUUU^           U       A     A       UUAGAU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-1989_5p

mirBase accessionNone
Sequence
0- UCAGCUGUCAUGAUGCUUUCUU -22
Get sequence
Star sequence

Rph-Mir-1989_3p* (predicted)

mirBase accessionNone
Sequence
38- GAAAGAAUUAUAACAGUUGUAA -60
Get sequence