MirGeneDB 3.0

MirGeneDB ID

Npo-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_018389105_NPO)
JACATO010000654.1: 597583-597645 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUUUCUUAAGAAAUGGAGAUUCUGCGUUUCAGCUGUCAUGAUGCCUUUUUUAGUAAAAUUAGAAUACAGAAAGUCAUUAAGACAGCUGUUAUACCGUAUCCCCGUUCACUGCUGACGAAGA
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Structure
        10        20        30           40        50        60 
CUUUUUCUUAAGAAAUGGAGAUUC    UUU---|       A     C      UAGUAAAA 
                        UGCG      CAGCUGUC UGAUG CUUUUU        \
                        AUGC      GUCGACAG AUUAC GAAAGA        U
AGAAGCAGUCGUCACUUGCCCCU-    CAUAUU^       A     U      CAUAAGAU 
 120       110        100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Npo-Mir-1989_5p (predicted)

mirBase accessionNone
Sequence
0- UCAGCUGUCAUGAUGCCUUUUU -22
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Star sequence

Npo-Mir-1989_3p* (predicted)

mirBase accessionNone
Sequence
41- AAAGUCAUUAAGACAGCUGUUA -63
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