MirGeneDB ID | Pdu-Mir-1989-P10 |
Family name |
MIR-1989 (all species) |
Seed |
CAGCUGU |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
|
Paralogues |
Pdu-Mir-1989-P5
Pdu-Mir-1989-P6
Pdu-Mir-1989-P7
Pdu-Mir-1989-P8
Pdu-Mir-1989-P9
|
Orthologues |
Agr-Mir-1989
Cte-Mir-1989
Lgi-Mir-1989
Llo-Mir-1989
Mgi-Mir-1989
Mom-Mir-1989
Npo-Mir-1989
Ofu-Mir-1989
Pau-Mir-1989
Pcr-Mir-1989
Pve-Mir-1989
Rph-Mir-1989
Sma-Mir-1989
Sme-Mir-1989
Snu-Mir-1989
|
Node of Origin (locus) |
P. dumerilii
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000010.1: 38602059-38602115 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAAAGAAAAAGAUUGCACCUGCACUGAUAUCAGCUGUAAAGAUGCCUUCUUGAAAUUCAUACAAGGAGCCAUUUUAACUGCUGACAUUGGCUGGGUCUCAUGCAGCACAUCUAUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAAAGAAAAAGAUUGC---| GCA UG A U A C GAAAU
ACCU C AU UCAGC GU AAGAUG CUUCUU \
UGGG G UA AGUCG CA UUUUAC GAGGAA U
ACUAUCUACACGACGUACUC^ UC- GU C U A C CAUAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Mature sequence |
Pdu-Mir-1989-P10_5p |
mirBase accession | None |
Sequence |
0- UCAGCUGUAAAGAUGCCUUCUU -22
Get sequence
|
Star sequence |
Pdu-Mir-1989-P10_3p* |
mirBase accession | None |
Sequence |
35- GGAGCCAUUUUAACUGCUGACA -57
Get sequence
|