| MirGeneDB ID | Cte-Mir-1989 |
|---|
| Family name |
MIR-1989 (all species) |
|---|
| Seed |
CAGCUGU |
|---|
| Species |
Polychaete worm (Capitella teleta) |
|---|
| MiRBase ID |
cte-mir-1989
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Agr-Mir-1989
Hru-Mir-1989-P4a
Hru-Mir-1989-P4b
Lan-Mir-1989-P1
Lan-Mir-1989-P2
Lan-Mir-1989-P3
Lgi-Mir-1989
Llo-Mir-1989
Mgi-Mir-1989
Mom-Mir-1989
Npo-Mir-1989
Ofu-Mir-1989
Pau-Mir-1989
Pcr-Mir-1989
Pdu-Mir-1989-P5
Pdu-Mir-1989-P6
Pdu-Mir-1989-P7
Pdu-Mir-1989-P8
Pdu-Mir-1989-P9
Pdu-Mir-1989-P10
Pve-Mir-1989
Rph-Mir-1989
Sma-Mir-1989
Sme-Mir-1989
Snu-Mir-1989
|
|---|
| Node of Origin (locus) |
Platytrochozoa
|
|---|
| Node of Origin (family) |
Platytrochozoa
|
|---|
Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_107: 265961-266017 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUCGUCUCCUUAGAAACCAUCCCGACCAGUUCAGCUGUCAUGAUGCCUUCUUAAGUUUUGAACAAGAGGGCGUCAUAACUGUUGACCUCGAAGGGAACCUUACCUCAUCUGCUUCGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCGUCUCCUUAGAAACCA--| GACC U U C AAGUU
UCCC AG UCAGC GU AUGAUGCCUUCUU \
AGGG UC AGUUG CA UACUGCGGGAGAA U
CGCUUCGUCUACUCCAUUCCA^ AAGC C U A CAAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Cte-Mir-1989_5p |
| mirBase accession | MIMAT0009704 |
|---|
| Sequence |
0- UCAGCUGUCAUGAUGCCUUCUU -22
Get sequence
|
|---|
| Co-mature sequence |
Cte-Mir-1989_3p |
| mirBase accession | None |
|---|
| Sequence |
35- GAGGGCGUCAUAACUGUUGACC -57
Get sequence
|
|---|
