| MirGeneDB ID | Sme-Mir-1989 |
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| Family name |
MIR-1989 (all species) |
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| Seed |
CAGCUGU |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-2154-2
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| Paralogues |
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| Orthologues |
Cgi-Mir-1989
Cte-Mir-1989
Lan-Mir-1989-P1
Lan-Mir-1989-P2
Lan-Mir-1989-P3
Lgi-Mir-1989
Npo-Mir-1989
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| Node of Origin (locus) |
Platytrochozoa
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| Node of Origin (family) |
Platytrochozoa
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000269_dd_Smes_g4_269: 298203-298269 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUUGUGAAACUUCGAGUGAUUAUUAGAAUUUCAGCUGUACAAUUGGCAUUGUGUAUGAUAAAUGAAUACAUUAACACAAGUCUUUGUAUAGCUUAUAUUUUUUAUCACUAAUCCACCCUCCUCCCCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUUGUGAAACUUCGAGU----| UAUU UUC UU A AUGAUAAAU
GAU AGAAU AGCUGUACAA GGC UUGUGU \
CUA UUUUA UCGAUAUGUU CUG AACACA G
CCCCCUCCUCCCACCUAAUCA^ UU-- UAU U- - AUUACAUAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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| Mature sequence |
Sme-Mir-1989_5p |
| mirBase accession | MIMAT0011244 |
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| Sequence |
0- UCAGCUGUACAAUUGGCAUUGUGU -24
Get sequence
|
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| Star sequence |
Sme-Mir-1989_3p* |
| mirBase accession | MIMAT0011412 |
|---|
| Sequence |
45- ACAAGUCUUUGUAUAGCUUAUA -67
Get sequence
|
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