MirGeneDB 3.0

MirGeneDB ID

Sme-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2154-2
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000269_dd_Smes_g4_269: 298203-298269 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGUGAAACUUCGAGUGAUUAUUAGAAUUUCAGCUGUACAAUUGGCAUUGUGUAUGAUAAAUGAAUACAUUAACACAAGUCUUUGUAUAGCUUAUAUUUUUUAUCACUAAUCCACCCUCCUCCCCC
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Structure
        10            20        30        40        50        60    
GUUGUGAAACUUCGAGU----|  UAUU     UUC          UU   A      AUGAUAAAU 
                     GAU    AGAAU   AGCUGUACAA  GGC UUGUGU         \
                     CUA    UUUUA   UCGAUAUGUU  CUG AACACA         G
CCCCCUCCUCCCACCUAAUCA^  UU--     UAU          U-   -      AUUACAUAA 
     120       110         100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-1989_5p

mirBase accessionMIMAT0011244
Sequence
0- UCAGCUGUACAAUUGGCAUUGUGU -24
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Star sequence

Sme-Mir-1989_3p*

mirBase accessionMIMAT0011412
Sequence
45- ACAAGUCUUUGUAUAGCUUAUA -67
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