| MirGeneDB ID | Pdu-Mir-1989-P6 |
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| Family name |
MIR-1989 (all species) |
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| Seed |
CAGCUGU |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
Pdu-Mir-1989-P5
Pdu-Mir-1989-P7
Pdu-Mir-1989-P8
Pdu-Mir-1989-P9
Pdu-Mir-1989-P10
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| Orthologues |
Agr-Mir-1989
Cte-Mir-1989
Lgi-Mir-1989
Llo-Mir-1989
Mgi-Mir-1989
Mom-Mir-1989
Npo-Mir-1989
Ofu-Mir-1989
Pau-Mir-1989
Pcr-Mir-1989
Pve-Mir-1989
Rph-Mir-1989
Sma-Mir-1989
Sme-Mir-1989
Snu-Mir-1989
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| Node of Origin (locus) |
P. dumerilii
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| Node of Origin (family) |
Platytrochozoa
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000010.1: 38603310-38603366 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGACUUCUCACUUGAAAGCCUACACUGUUAUCAGCUGUCACGAUGCCUUCUUGUCAUUUACCGAAGGGGGCAUUUUAACUGCUGACAUUAGUUAGGUUCAUAAUCACACAAUGACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGACUUCUCACUUGAAA---| C UUA U CAC GUCAU
GCCUA ACUG UCAGC GU GAUGCCUUCUU \
UGGAU UGAU AGUCG CA UUACGGGGGAA U
CACAGUAACACACUAAUACU^ - UAC U AUU GCCAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Mature sequence |
Pdu-Mir-1989-P6_5p |
| mirBase accession | None |
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| Sequence |
0- UCAGCUGUCACGAUGCCUUCUU -22
Get sequence
|
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| Star sequence |
Pdu-Mir-1989-P6_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- GGGGGCAUUUUAACUGCUGACA -57
Get sequence
|
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