MirGeneDB 3.0

MirGeneDB ID

Agr-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues
Orthologues Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)
JABBOT010000001.1: 31989608-31989664 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGGCGUUUGCUUGUGGUGGUUUUGUUGGUCAGCUGUCACGAUGCCUUCUUGUUUAGAGACAGAGAAGUCUUUGUGACAACUGAACAACAGGCCGCUGAUUUCAGGUCCAUGCUUU
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Structure
        10           20        30        40        50        
AGUGGCGUUUGCUUGUG---|      U    G    C        UGC      GUUUA 
                    GUGGUUU GUUG UCAG UGUCACGA   CUUCUU     \
                    CGCCGGA CAAC AGUC ACAGUGUU   GAAGAG     G
UUUCGUACCUGGACUUUAGU^      -    A    A        UCU      ACAGA 
     110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Agr-Mir-1989_5p

mirBase accessionNone
Sequence
0- UCAGCUGUCACGAUGCCUUCUU -22
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Star sequence

Agr-Mir-1989_3p* (predicted)

mirBase accessionNone
Sequence
35- GAAGUCUUUGUGACAACUGAAC -57
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