MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-1989-P4a

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-1989-P4b 
Orthologues Agr-Mir-1989  Cte-Mir-1989  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) H. rufescens
Node of Origin (family) Platytrochozoa
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000006.1: 51473548-51473604 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGGUGCUGGAGGAAUGACAAGUGAAAUGUCAGCUGUCAUGAUGCCUUCGAUUAUCAUGUAUUUGAAGUCUUUGUGACAUCUGGUAUUUACCUUGAUAAUAUCAGCAAACAACCAU
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Structure
        10          20        30        40        50        
UUGGGUGCUGGAGGAAUGA--|   UG    GU   C     UG UGC      UUAUC 
                     CAAG  AAAU  CAG UGUCA  A   CUUCGA     \
                     GUUC  UUUA  GUC ACAGU  U   GAAGUU     A
UACCAACAAACGACUAUAAUA^   CA    UG   U     GU UCU      UAUGU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Mature sequence

Hru-Mir-1989-P4a_5p
mirBase accessionNone
Sequence 
0- UCAGCUGUCAUGAUGCCUUCGA -22
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Star sequence

Hru-Mir-1989-P4a_3p*
mirBase accessionNone
Sequence 
35- GAAGUCUUUGUGACAUCUGGUA -57
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