MirGeneDB 3.0

MirGeneDB ID

Ofu-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_903813345.2_Owenia)
CAIIXF020000006.1: 23701222-23701280 [-]
Precursor
(pre-Mir +30nt flank)
UUCACAAAAAAAGGAAUUUCUGCUUCUGUAUCAGCUGUCAUAAUGCCUUCUUUUAAAUAUCAAUAAAGAAUGCAAUUUGGCGACUGAUAUUGCGGUAGAUAUUUGCAUCAUAACGGAAG
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Structure
        10          20        30        40        50         
UUCACAAAAAAAGGAAUU--|     UCU       C     UAA   C     UUAAAU 
                    UCUGCU   GUAUCAG UGUCA   UGC UUCUU      \
                    AGAUGG   UAUAGUC GCGGU   ACG AAGAA      A
GAAGGCAAUACUACGUUUAU^     CGU       A     UUA   U     AUAACU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ow Ow
Mature sequence

Ofu-Mir-1989_5p (predicted)

mirBase accessionNone
Sequence
0- UCAGCUGUCAUAAUGCCUUCUU -22
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Co-mature sequence

Ofu-Mir-1989_3p (predicted)

mirBase accessionNone
Sequence
37- GAAUGCAAUUUGGCGACUGAUA -59
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