MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1989-P9

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P10 
Orthologues Agr-Mir-1989  Cte-Mir-1989  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Platytrochozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000010.1: 38602338-38602394 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UACAAUAAGAAUAUUGCACCCGCACUGAUAUCAGCUGUAAAGAUGCCUUCUUGAAAUUUAAACAAGGAGUCAUUUUAACUGCUGACAUUGGCUAGGUCUCACUCAGCGCAGACAUAU
Get precursor sequence
Structure
        10          20        30        40        50        
UACAAUAAGAAUAUUGCAC--| GCA UG  A     U  A      C      GAAAU 
                     CC   C  AU UCAGC GU AAGAUG CUUCUU     \
                     GG   G  UA AGUCG CA UUUUAC GAGGAA     U
UAUACAGACGCGACUCACUCU^ AUC GU  C     U  A      U      CAAAU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1989-P9_5p
mirBase accessionNone
Sequence 
0- UCAGCUGUAAAGAUGCCUUCUU -22
Get sequence
Star sequence

Pdu-Mir-1989-P9_3p*
mirBase accessionNone
Sequence 
35- GGAGUCAUUUUAACUGCUGACA -57
Get sequence