MirGeneDB 3.0

MirGeneDB ID

Pau-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(Phoronis_australis_GCA_002633005)
NMRA01000103.1: 906866-906924 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGGAGUGCCACUCUGACGUCUGCCUCACGACAGCUGUCAUGAUGCCUUCUUGUCUGUCCAAACAAGGAAGGUGUUAUGACGGCUGGUGUGUGGAGAUUGUUGUCAUCUUAUGAUGCUC
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Structure
        10           20        30        40        50         
UAGGAGUGCCACUCUGAC---|   G  U    A                     GUCUGU 
                     GUCU CC CACG CAGCUGUCAUGAUGCCUUCUU      \
                     UAGA GG GUGU GUCGGCAGUAUUGUGGAAGGA      C
CUCGUAGUAUUCUACUGUUGU^   -  U    G                     ACAAAC 
       110       100         90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pau-Mir-1989_5p (predicted)

mirBase accessionNone
Sequence
0- ACAGCUGUCAUGAUGCCUUCUU -22
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Star sequence

Pau-Mir-1989_3p* (predicted)

mirBase accessionNone
Sequence
37- GAAGGUGUUAUGACGGCUGGUG -59
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