MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601626.3: 19053664-19053745 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAUUCUAGCUAAAGAGUUAAACUCAACUUCAGCUGUGUUCAUGUCUUCGAUAAAAGAUUACAUUUAUGUAUUCAAUUUUCUCAAUGUCGAAGAAAUGAGCACAACUUAGGCUGUUUACUCUGAAACAACUUGAAAAGGUU
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Structure
        10            20        30        40        50        60        70
UGAAUUCUAGCUAAAGAGU----|    UCAA   C  C         G        AAAAGAUUACAUUUAU 
                       UAAAC    CUU AG UGUGUUCAU UCUUCGAU                G
                       AUUUG    GGA UC ACACGAGUA AGAAGCUG                U
UUGGAAAAGUUCAACAAAGUCUC^    UC--   U  A         A        UAACUCUUUUAACUUA 
140       130       120         110       100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Mature sequence

Sma-Mir-1989_5p
mirBase accessionNone
Sequence 
0- UCAGCUGUGUUCAUGUCUUCGAU -23
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Star sequence

Sma-Mir-1989_3p* (predicted)
mirBase accessionNone
Sequence 
59- CGAAGAAAUGAGCACAACUUAGG -82
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