MirGeneDB 3.0

MirGeneDB ID

Lgi-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-1989
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(Lotgi1)
LOTGIsca_2: 5468355-5468415 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUCUCGAGUUCUUACACGAGGGAGACUAUCAGCUGUCAUGAUGCCUUCCUGUUUUGGAAGAGUUUGGGUAGGCAUUAUGAAGGUUGGUAAUUUCCUUUGUUAAAAUCAACAACUCCCAC
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Structure
        10          20        30        40        50          
AUAUCUCGAGUUCUUAC--|         C        G           U   GUUUUGG 
                   ACGAGGGAGA UAUCAGCU UCAUGAUGCCU CCU       \
                   UGUUUCCUUU AUGGUUGG AGUAUUACGGA GGG       A
CACCCUCAACAACUAAAAU^         A        A           U   UUUGAGA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Lgi-Mir-1989_5p (predicted)

mirBase accessionMIMAT0009730
Sequence
0- UCAGCUGUCAUGAUGCCUUCCU -22
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Star sequence

Lgi-Mir-1989_3p*

mirBase accessionNone
Sequence
39- GUAGGCAUUAUGAAGGUUGGUA -61
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