MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(CGI_GCA_000297895.1)		 scaffold593: 350245-350303 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCUAGCUUAAUCAGAAGGCCUAAGCAAUUCAGCUGUCACGAUGCCUUCUUGUGUGAAUAGAGUAAGAAGUUGUCGAGACAGCUGUGUUGUCUGCGGCCAGCUUGCUUCUGCUUUGUU
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Structure
        10         20         30        40        50         
UGCCUAGCUUAAUCAGAA-    -| AG    U        A    GC      GUGUGA 
                   GGCC UA  CAAU CAGCUGUC CGAU  CUUCUU      \
                   CCGG GU  GUUG GUCGACAG GCUG  GAAGAA      A
UUGUUUCGUCUUCGUUCGA    C^ CU    U        A    UU      UGAGAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-1989_5p
mirBase accessionNone
Sequence 
0- UCAGCUGUCACGAUGCCUUCUU -22
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Star sequence

Mgi-Mir-1989_3p*
mirBase accessionNone
Sequence 
37- GAAGUUGUCGAGACAGCUGUGU -59
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