| MirGeneDB ID | Hru-Mir-1989-P4b |
|---|
| Family name |
MIR-1989 (all species) |
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| Seed |
CAGCUGU |
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| Species |
Red Abalone (Haliotis rufescens) |
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| MiRBase ID |
|
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| Paralogues |
Hru-Mir-1989-P4a
|
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| Orthologues |
Agr-Mir-1989
Cte-Mir-1989
Lgi-Mir-1989
Llo-Mir-1989
Mgi-Mir-1989
Mom-Mir-1989
Npo-Mir-1989
Ofu-Mir-1989
Pau-Mir-1989
Pcr-Mir-1989
Pve-Mir-1989
Rph-Mir-1989
Sma-Mir-1989
Sme-Mir-1989
Snu-Mir-1989
|
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| Node of Origin (locus) |
H. rufescens
|
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| Node of Origin (family) |
Platytrochozoa
|
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Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000006.1: 51636455-51636511 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUGGGUGCUGGAGGAAUGACAAGUGAAAUGUCAGCUGUCAUGAUGCCUUCGAUUAUCAUGUAUUUGAAGUCUUUGUGACAUCUGGUAUUUACCUUGAUAAUAUCAGCAAACAACCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGGGUGCUGGAGGAAUGA--| UG GU C UG UGC UUAUC
CAAG AAAU CAG UGUCA A CUUCGA \
GUUC UUUA GUC ACAGU U GAAGUU A
UACCAACAAACGACUAUAAUA^ CA UG U GU UCU UAUGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Hru-Mir-1989-P4b_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCAGCUGUCAUGAUGCCUUCGA -22
Get sequence
|
|---|
| Star sequence |
Hru-Mir-1989-P4b_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- GAAGUCUUUGUGACAUCUGGUA -57
Get sequence
|
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