MirGeneDB 3.0
MirGeneDB ID

Pcr-Mir-1989

Family name MIR-1989 (all species)
Seed CAGCUGU
Species Tiger flatworm (Prostheceraeus crozieri )
MiRBase ID
Paralogues
Orthologues Agr-Mir-1989  Cte-Mir-1989  Hru-Mir-1989-P4a  Hru-Mir-1989-P4b  Lan-Mir-1989-P1  Lan-Mir-1989-P2  Lan-Mir-1989-P3  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pdu-Mir-1989-P5  Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic)		 CAJQUW010008041.1: 665567-665625 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUUUACAGAGAUCGUGACGCGGAUGUCGUCAGCUGUUACGGAUGCCUUCUUCUUGGAGCUGUUGAAGAGACAUUCUGACUGCUGGCGACUCCUGUGUCUAUUCCACGGCAAUGAAAA
Get precursor sequence
Structure
        10          20        30        40        50          
UUCUUUACAGAGAUCGU--|      AU         U    C     CC      UUGGA 
                   GACGCGG  GUCGUCAGC GUUA GGAUG  UUCUUC     \
                   CUGUGUC  CAGCGGUCG CAGU CUUAC  GAGAAG     G
AAAAGUAACGGCACCUUAU^      CU         U    -     A-      UUGUC 
       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pcr-Mir-1989_5p
mirBase accessionNone
Sequence 
0- UCAGCUGUUACGGAUGCCUUCUUC -24
Get sequence
Star sequence

Pcr-Mir-1989_3p*
mirBase accessionNone
Sequence 
37- AGAGACAUUCUGACUGCUGGCG -59
Get sequence