MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-12610-v1

Family name MIR-12610 (all species)
Seed AUAUCUG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-12610-v2 
Orthologues
Node of Origin (locus) Heteroconchia
Node of Origin (family) Heteroconchia
Genome context
(Ruditapes_GCA_009026015)
QUSP01001701.1: 75446-75503 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGGAACACGUCAGAGAAACGGGCAAAUGUCGCUGUUGACACAGGUAGAGUGUAAUCAGCGUCACUAUAUCUGUGAUAACAACGACGUACAACCGUCAUAUACAACAUACGUCAUAU
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Structure
        10          20        30        40        50        
AAUGGAACACGUCAGAGAA--|   GCAA      C     A        G   GUAAU 
                     ACGG    AUGUCG UGUUG CACAGGUA AGU     C
                     UGCC    UGCAGC ACAAU GUGUCUAU UCA     A
UAUACUGCAUACAACAUAUAC^   AACA      A     A        A   CUGCG 
      110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Star sequence

Rph-Mir-12610-v1_5p*

mirBase accessionNone
Sequence
0- UCGCUGUUGACACAGGUAGAGU -22
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Mature sequence

Rph-Mir-12610-v1_3p

mirBase accessionNone
Sequence
36- UAUAUCUGUGAUAACAACGACG -58
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