MirGeneDB ID | Rph-Mir-12610-v1 |
---|---|
Family name | MIR-12610 (all species) |
Seed | AUAUCUG |
Species | Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID | |
Paralogues | Rph-Mir-12610-v2 |
Orthologues | |
Node of Origin (locus) | Heteroconchia |
Node of Origin (family) | Heteroconchia |
Genome context (Ruditapes_GCA_009026015) |
QUSP01001701.1: 75446-75503 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | AAUGGAACACGUCAGAGAAACGGGCAAAUGUCGCUGUUGACACAGGUAGAGUGUAAUCAGCGUCACUAUAUCUGUGAUAACAACGACGUACAACCGUCAUAUACAACAUACGUCAUAUGet precursor sequence |
Structure | 10 20 30 40 50 AAUGGAACACGUCAGAGAA--| GCAA C A G GUAAU ACGG AUGUCG UGUUG CACAGGUA AGU C UGCC UGCAGC ACAAU GUGUCUAU UCA A UAUACUGCAUACAACAUAUAC^ AACA A A A CUGCG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Rph-Mir-12610-v1_5p* |
mirBase accession | None |
Sequence |
0- UCGCUGUUGACACAGGUAGAGU -22
Get sequence
|
Mature sequence | Rph-Mir-12610-v1_3p |
mirBase accession | None |
Sequence |
36- UAUAUCUGUGAUAACAACGACG -58
Get sequence
|