MirGeneDB ID | Rph-Mir-12610-v2 |
Family name |
MIR-12610 (all species) |
Seed |
CGCUGUU |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
Rph-Mir-12610-v1
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Orthologues |
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Node of Origin (locus) |
Heteroconchia
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Node of Origin (family) |
Heteroconchia
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Genome context (Ruditapes_GCA_009026015) |
QUSP01001701.1: 75446-75503 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AAUGGAACACGUCAGAGAAACGGGCAAAUGUCGCUGUUGACACAGGUAGAGUGUAAUCAGCGUCACUAUAUCUGUGAUAACAACGACGUACAACCGUCAUAUACAACAUACGUCAUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUGGAACACGUCAGAGAA--| GCAA C A G UAAU
ACGG AUGUCG UGUUG CACAGGUA AGUG C
UGCC UGCAGC ACAAU GUGUCUAU UCAC A
UAUACUGCAUACAACAUAUAC^ AACA A A A UGCG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Mature sequence |
Rph-Mir-12610-v2_5p |
mirBase accession | None |
Sequence |
0- UCGCUGUUGACACAGGUAGAGUG -23
Get sequence
|
Star sequence |
Rph-Mir-12610-v2_3p* |
mirBase accession | None |
Sequence |
35- CUAUAUCUGUGAUAACAACGACG -58
Get sequence
|