| MirGeneDB ID | Rph-Mir-12610-v2 |
|---|---|
| Family name | MIR-12610 (all species) |
| Seed | CGCUGUU |
| Species | Japanese carpet shell (Ruditapes philippinarum) |
| MiRBase ID | |
| Paralogues | Rph-Mir-12610-v1 |
| Orthologues | |
| Node of Origin (locus) | Heteroconchia |
| Node of Origin (family) | Heteroconchia |
| Genome context (Ruditapes_GCA_009026015) |
QUSP01001701.1: 75446-75503 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | AAUGGAACACGUCAGAGAAACGGGCAAAUGUCGCUGUUGACACAGGUAGAGUGUAAUCAGCGUCACUAUAUCUGUGAUAACAACGACGUACAACCGUCAUAUACAACAUACGUCAUAUGet precursor sequence |
| Structure | 10 20 30 40 50 AAUGGAACACGUCAGAGAA--| GCAA C A G UAAU ACGG AUGUCG UGUUG CACAGGUA AGUG C UGCC UGCAGC ACAAU GUGUCUAU UCAC A UAUACUGCAUACAACAUAUAC^ AACA A A A UGCG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Rph-Mir-12610-v2_5p |
| mirBase accession | None |
| Sequence |
0- UCGCUGUUGACACAGGUAGAGUG -23
Get sequence
|
| Star sequence | Rph-Mir-12610-v2_3p* |
| mirBase accession | None |
| Sequence |
35- CUAUAUCUGUGAUAACAACGACG -58
Get sequence
|
