| MirGeneDB ID | Rph-Mir-1984-P2 |
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| Family name |
MIR-1984 (all species) |
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| Seed |
GCCAUUU |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
Rph-Mir-1984-P1
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| Orthologues |
Esc-Mir-1984
Hru-Mir-1984-P2
Lgi-Mir-1984-P2
Lhy-Mir-1984
Mgi-Mir-1984-P2
Npo-Mir-1984
Pve-Mir-1984-P2
|
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| Node of Origin (locus) |
Gastropoda + Bivalvia + Scaphopoda
|
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| Node of Origin (family) |
Conchifera
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Genome context
(Ruditapes_GCA_009026015) |
CM018530.1: 35717317-35717375 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUAAAGAGAAAAAAAACACAGUAUAAACGUGCCAUUUUUAUCAGUCACUGUGUGAUUAUAAUGUCGCAGGACUGAUAGGAAUGGAAUGCCAAACUGUUGACAGCAGCAAUAAAAAGCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUAAAGAGAAAAAAAAC---| AUAAA G A UGAUU
ACAGU CGU CCAUUUUUAUCAGUC CUGUG A
UGUCA GUA GGUAAGGAUAGUCAG GACGC U
GCGAAAAAUAACGACGACAGU^ AACC- A - UGUAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Mature sequence |
Rph-Mir-1984-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCAUUUUUAUCAGUCACUGUG -23
Get sequence
|
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| Star sequence |
Rph-Mir-1984-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CAGGACUGAUAGGAAUGGAAUG -59
Get sequence
|
|---|
