MirGeneDB 3.0

MirGeneDB ID

Lhy-Mir-1984

Family name MIR-1984 (all species)
Seed GCCCUAU
Species Laevipilina (Monoplacophora) (Laevipilina hyalina)
MiRBase ID
Paralogues
Orthologues Esc-Mir-1984  Hru-Mir-1984-P1  Hru-Mir-1984-P2  Lgi-Mir-1984-P1  Lgi-Mir-1984-P2  Mgi-Mir-1984-P1  Mgi-Mir-1984-P2  Npo-Mir-1984  Obi-Mir-1984-P3  Obi-Mir-1984-P4  Ovu-Mir-1984-P3  Ovu-Mir-1984-P4  Pve-Mir-1984-P1  Pve-Mir-1984-P2  Rph-Mir-1984-P1  Rph-Mir-1984-P2 
Node of Origin (locus) Conchifera
Node of Origin (family) Conchifera
Genome context
(Mono_atcgn_nospaces)
scaffold242045_17.2: 95-150 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUAAUUAUACCCUUUGUUUCGUCCGCUGUGCCCUAUGCUUCAGCCACGGUGUUGAUGUUGCACAGUGGUUGCUGCUAGGGCCCAACGUGCGCAACUCGAUUCGUCGAAGAGUAA
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Structure
        10          20        30        40        50        
AAUUAAUUAUACCCUUU--|  U  UC  C  U      U  UU       G   UUGA 
                   GUU CG  CG UG GCCCUA GC  CAGCCAC GUG    \
                   CAA GC  GC AC CGGGAU CG  GUUGGUG CAC    U
AAUGAGAAGCUGCUUAGCU^  C  GU  A  C      -  UC       A   GUUG 
    110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Lhy-Mir-1984_5p

mirBase accessionNone
Sequence
0- UGCCCUAUGCUUCAGCCACGGUG -23
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Star sequence

Lhy-Mir-1984_3p* (predicted)

mirBase accessionNone
Sequence
34- CAGUGGUUGCUGCUAGGGCCCA -56
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