| MirGeneDB ID | Hru-Mir-1984-P1 |
|---|
| Family name |
MIR-1984 (all species) |
|---|
| Seed |
GCCCUAU |
|---|
| Species |
Red Abalone (Haliotis rufescens) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Hru-Mir-1984-P2
|
|---|
| Orthologues |
Esc-Mir-1984
Lgi-Mir-1984-P1
Lhy-Mir-1984
Mgi-Mir-1984-P1
Npo-Mir-1984
Pve-Mir-1984-P1
Rph-Mir-1984-P1
|
|---|
| Node of Origin (locus) |
Gastropoda + Bivalvia + Scaphopoda
|
|---|
| Node of Origin (family) |
Conchifera
|
|---|
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000013.1: 5722214-5722269 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUUUUUAAAAUGGCGUUGUGCCUCACGUUGUGCCCUAUCCGUCAGGAACUGUGUGUGAUUCCCACAGUGUCUGUGGAUACGGCCCAUCGUUUGGCACUCCCUCAUCCCGACAACCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUUUUAAAAUGGCGUU--| UC U U C U GA UGUG
GUGCC ACG UG GCC UAUCCG CAG ACUGUG \
CACGG UGC AC CGG AUAGGU GUC UGACAC A
ACCAACAGCCCUACUCCCU^ UU U C C - UG CCUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Hru-Mir-1984-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCCUAUCCGUCAGGAACUGUG -23
Get sequence
|
|---|
| Star sequence |
Hru-Mir-1984-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- CAGUGUCUGUGGAUACGGCCCA -56
Get sequence
|
|---|
