MirGeneDB 3.0
MirGeneDB ID

Lgi-Mir-1984-P1

Family name MIR-1984 (all species)
Seed GCCCUAU
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-1984
Paralogues Lgi-Mir-1984-P2 
Orthologues Esc-Mir-1984  Hru-Mir-1984-P1  Lhy-Mir-1984  Mgi-Mir-1984-P1  Npo-Mir-1984  Pve-Mir-1984-P1  Rph-Mir-1984-P1 
Node of Origin (locus) Gastropoda + Bivalvia + Scaphopoda
Node of Origin (family) Conchifera
Genome context
(Lotgi1)		 LOTGIsca_4: 4879135-4879195 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1984-P1)		 Mir-1984-P1 LOTGIsca_4: 4879135-4879195 [+] Ensembl
Mir-1984-P2 LOTGIsca_4: 4881330-4881387 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUAAUUGAAACUUAUGCCUACGAUGCCUUGCCCUAUCCGUCAGGAACUGUGAUAUAGUUAAUAGACACAGUGCCUAUCGGUAGGGAACAGUAUCGCAGAGCUCGUCAGCUGAGUCAGGA
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Structure
        10          20        30        40        50        60
UGGUAAUUGAAACUUAU-  -| A      CUUG     U   UC   A      AUAUAG 
                  GC CU CGAUGC    CCCUA CCG  AGG ACUGUG      U
                  CG GA GCUAUG    GGGAU GGC  UCC UGACAC      U
AGGACUGAGUCGACUGCU  A^ C      ACAA     -   UA   G      AGAUAA 
 .       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Lgi-Mir-1984-P1_5p
mirBase accessionMIMAT0009726
Sequence 
0- UGCCCUAUCCGUCAGGAACUGUG -23
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Star sequence

Lgi-Mir-1984-P1_3p* (predicted)
mirBase accessionNone
Sequence 
39- CAGUGCCUAUCGGUAGGGAACA -61
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