MirGeneDB 3.0

MirGeneDB ID

Mgi-Mir-1984-P1

Family name MIR-1984 (all species)
Seed GCCCUAU
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-1984-P2 
Orthologues Esc-Mir-1984  Hru-Mir-1984-P1  Lgi-Mir-1984-P1  Lhy-Mir-1984  Npo-Mir-1984  Pve-Mir-1984-P1  Rph-Mir-1984-P1 
Node of Origin (locus) Gastropoda + Bivalvia + Scaphopoda
Node of Origin (family) Conchifera
Genome context
(CGI_GCA_000297895.1)
scaffold339: 59463-59521 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAUUUGUUACUUACACACGGGACGGCAUGCCCUAUCCGUCAGUCGCUGCCUCGUUUUGAAUAGCAGGGACUGUCGAAUGGGAUUUGCUGUCUCGGGUCGCUCUUCAGUCGUAUUUU
Get precursor sequence
Structure
        10        20          30        40        50         
UUUCAUUUGUUACUUACACA--|         UGC     C  U     G    CUCGUU 
                      CGGGACGGCA   CCUAU CG CAGUC CUGC      \
                      GCUCUGUCGU   GGGUA GC GUCAG GACG      U
UUUUAUGCUGACUUCUCGCUGG^         UUA     A  U     G    AUAAGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Mgi-Mir-1984-P1_5p

mirBase accessionNone
Sequence
0- UGCCCUAUCCGUCAGUCGCUGC -22
Get sequence
Star sequence

Mgi-Mir-1984-P1_3p*

mirBase accessionNone
Sequence
37- AGGGACUGUCGAAUGGGAUUUG -59
Get sequence