| MirGeneDB ID | Mgi-Mir-1984-P1 |
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| Family name |
MIR-1984 (all species) |
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| Seed |
GCCCUAU |
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| Species |
Pacific oyster (Magallana gigas) |
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| MiRBase ID |
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| Paralogues |
Mgi-Mir-1984-P2
|
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| Orthologues |
Esc-Mir-1984
Hru-Mir-1984-P1
Lgi-Mir-1984-P1
Lhy-Mir-1984
Npo-Mir-1984
Pve-Mir-1984-P1
Rph-Mir-1984-P1
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| Node of Origin (locus) |
Gastropoda + Bivalvia + Scaphopoda
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| Node of Origin (family) |
Conchifera
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Genome context
(CGI_GCA_000297895.1) |
scaffold339: 59463-59521 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUCAUUUGUUACUUACACACGGGACGGCAUGCCCUAUCCGUCAGUCGCUGCCUCGUUUUGAAUAGCAGGGACUGUCGAAUGGGAUUUGCUGUCUCGGGUCGCUCUUCAGUCGUAUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUCAUUUGUUACUUACACA--| UGC C U G CUCGUU
CGGGACGGCA CCUAU CG CAGUC CUGC \
GCUCUGUCGU GGGUA GC GUCAG GACG U
UUUUAUGCUGACUUCUCGCUGG^ UUA A U G AUAAGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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| Mature sequence |
Mgi-Mir-1984-P1_5p |
| mirBase accession | None |
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| Sequence |
0- UGCCCUAUCCGUCAGUCGCUGC -22
Get sequence
|
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| Star sequence |
Mgi-Mir-1984-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- AGGGACUGUCGAAUGGGAUUUG -59
Get sequence
|
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