| MirGeneDB ID | Mgi-Mir-1984-P2 |
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| Family name |
MIR-1984 (all species) |
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| Seed |
GCCAUUU |
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| Species |
Pacific oyster (Magallana gigas) |
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| MiRBase ID |
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| Paralogues |
Mgi-Mir-1984-P1
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| Orthologues |
Esc-Mir-1984
Hru-Mir-1984-P2
Lgi-Mir-1984-P2
Lhy-Mir-1984
Npo-Mir-1984
Pve-Mir-1984-P2
Rph-Mir-1984-P2
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| Node of Origin (locus) |
Gastropoda + Bivalvia + Scaphopoda
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| Node of Origin (family) |
Conchifera
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Genome context
(CGI_GCA_000297895.1) |
scaffold339: 60097-60155 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUGCCGAUCUUGGAAAGGGUAGAUCGUCCUGCCAUUUUUAUCAGUCACUGUGUGUUUAGAAAAUCGCAGGACAGAUAUGAAUGGCAUAAUAGACUACCGACAGCUGCCAAUAGAAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUGCCGAUCUUGGAAAG--| A GUCC- U A A UGUUU
GGUAG UC UGCCAUUU UAUC GUC CUGUG A
CCAUC AG ACGGUAAG AUAG CAG GACGC G
AAAAAGAUAACCGUCGACAG^ - AUAAU U A - UAAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Mature sequence |
Mgi-Mir-1984-P2_5p |
| mirBase accession | None |
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| Sequence |
0- UGCCAUUUUUAUCAGUCACUGUG -23
Get sequence
|
|---|
| Star sequence |
Mgi-Mir-1984-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CAGGACAGAUAUGAAUGGCAUA -59
Get sequence
|
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