| MirGeneDB ID | Hru-Mir-1984-P2 |
|---|
| Family name |
MIR-1984 (all species) |
|---|
| Seed |
GCCAUUU |
|---|
| Species |
Red Abalone (Haliotis rufescens) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Hru-Mir-1984-P1
|
|---|
| Orthologues |
Esc-Mir-1984
Lgi-Mir-1984-P2
Lhy-Mir-1984
Mgi-Mir-1984-P2
Npo-Mir-1984
Pve-Mir-1984-P2
Rph-Mir-1984-P2
|
|---|
| Node of Origin (locus) |
Gastropoda + Bivalvia + Scaphopoda
|
|---|
| Node of Origin (family) |
Conchifera
|
|---|
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000013.1: 5718775-5718831 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACAGAGCAAGAUGUGUCUUGUGGUGUGCCAUGCCAUUUUUAUCAGUCACUGUGUUCGAAAACUCGCAGUGUCGAUGACAAUGGCCUGAUAAUCCACUCACCCCAACAUUCUCCAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAGAGCAAGAUGUGUCUU--| UG C U U AGU UUCG
GUGG UG CA GCCAUU UUAUC CACUGUG A
CACC AU GU CGGUAA AGUAG GUGACGC A
CUGACCUCUUACAACCCCACU^ UA A C C CU- UCAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Hru-Mir-1984-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCAUUUUUAUCAGUCACUGUG -23
Get sequence
|
|---|
| Star sequence |
Hru-Mir-1984-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CAGUGUCGAUGACAAUGGCCUG -57
Get sequence
|
|---|
