| MirGeneDB ID | Rph-Mir-1984-P1 |
|---|
| Family name |
MIR-1984 (all species) |
|---|
| Seed |
GCCCUAU |
|---|
| Species |
Japanese carpet shell (Ruditapes philippinarum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Rph-Mir-1984-P2
|
|---|
| Orthologues |
Esc-Mir-1984
Hru-Mir-1984-P1
Lgi-Mir-1984-P1
Lhy-Mir-1984
Mgi-Mir-1984-P1
Npo-Mir-1984
Pve-Mir-1984-P1
|
|---|
| Node of Origin (locus) |
Gastropoda + Bivalvia + Scaphopoda
|
|---|
| Node of Origin (family) |
Conchifera
|
|---|
Genome context
(Ruditapes_GCA_009026015) |
CM018530.1: 35728759-35728815 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGAUCAUGGAUGUAUUUUAUUUUGCUCCCUGCCCUAUCCGUCAGUCGCUGCGUAGAAAAAUCGCGGCGACUUUCAGAUUGGCCAUCGGGCAGUAUUAAACAGCUUCUGUACAGACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGAUCAUGGAUGUAUUUUAUUU - U---| CU CGUC UAGA
UGCU CCC GCC AUC AGUCGCUGCG \
AUGA GGG CGG UAG UCAGCGGCGC A
GCAGACAUGUCUUCGACAAAUU- C CUAC^ U- ACUU UAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Rph-Mir-1984-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCCUAUCCGUCAGUCGCUGCG -23
Get sequence
|
|---|
| Star sequence |
Rph-Mir-1984-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- CGGCGACUUUCAGAUUGGCCAUC -57
Get sequence
|
|---|
