MirGeneDB 3.0

MirGeneDB ID

Ovu-Mir-1984-P3

Family name MIR-1984 (all species)
Seed GCCCUAU
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues Ovu-Mir-1984-P4 
Orthologues Esc-Mir-1984  Lhy-Mir-1984  Npo-Mir-1984  Obi-Mir-1984-P3 
Node of Origin (locus) Octopus
Node of Origin (family) Conchifera
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01064954.1: 99986-100044 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAACUUAUAUUGUUUUAAGGUUGGUUAUUUGCCCUAUACCUCAGUCGCUGUGUUAAUGAAACCUCAGCGUCUGAUGUCGUAAGGCACGUUAACAACUGUCACACGUCGAAUGUCGCCA
Get precursor sequence
Structure
        10          20        30         40        50        
GAAACUUAUAUUGUUUUAA--     GUU  U    C   -| C    U     UGUUAA 
                     GGUUG   AU UGCC UAU AC UCAG CGCUG      U
                     UCAAC   UG ACGG AUG UG AGUC GCGAC      G
ACCGCUGUAAGCUGCACACUG     AAU  C    A   C^ U    U     UCCAAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ax Ce Fr He In Op Op Pe Po Re Sk St Su Su Te Ve Vi Wh
Mature sequence

Ovu-Mir-1984-P3_5p

mirBase accessionNone
Sequence
0- UGCCCUAUACCUCAGUCGCUGU -22
Get sequence
Star sequence

Ovu-Mir-1984-P3_3p*

mirBase accessionNone
Sequence
36- AGCGUCUGAUGUCGUAAGGCACG -59
Get sequence