MirGeneDB 3.0

MirGeneDB ID

Ovu-Mir-1984-P4

Family name MIR-1984 (all species)
Seed GCCCUAU
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues Ovu-Mir-1984-P3 
Orthologues Esc-Mir-1984  Lhy-Mir-1984  Npo-Mir-1984  Obi-Mir-1984-P4 
Node of Origin (locus) Octopus
Node of Origin (family) Conchifera
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01026360.1: 2286-2345 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUUAUCGUUGUUACGGGUUUUUAUCAACUGCCCUAUACCCCAGUCACUGAGUGAUCAUUACUAUCAGUGACAAAGGUAUAGAGGUAGUUGAAUAAUACCGACGUCAACGGAGAUUAUC
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Structure
        10          20         30         40        50         
CUGUUAUCGUUGUUACG--   UU   -         -|      CCA        GUGAUC 
                   GGU  UUA UCAACUGCC CUAUACC   GUCACUGA      \
                   CCA  AAU AGUUGAUGG GAUAUGG   CAGUGACU      A
CUAUUAGAGGCAACUGCAG   U-   A         A^      AAA        AUCAUU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ax Ce Fr He In Op Op Pe Po Re Sk St Su Su Te Ve Vi Wh
Mature sequence

Ovu-Mir-1984-P4_5p

mirBase accessionNone
Sequence
0- UGCCCUAUACCCCAGUCACUGA -22
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Star sequence

Ovu-Mir-1984-P4_3p*

mirBase accessionNone
Sequence
37- AGUGACAAAGGUAUAGAGGUAGU -60
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