MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pca-Mir-12-P12  Pca-Mir-12-P13  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Snu-Mir-12  Tca-Mir-12  Tur-Mir-12-P14  Tur-Mir-12-P15  War-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)		 CM018538.1: 42667417-42667474 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AACUGGAAAUAGUGAUUGAAAGAUAGGCUAUGAGUAUUACAUCAGGUACUGACUGUAUGUUUGUUCCGUACCUUAUGUGAUGUUCUUACUUUGUCUUGUCUGAAACAAACACAUUGGG
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Structure
        10          20        30        40        50        
AACUGGAAAUAGUGAUU-  -|       C  U           C      U  CUGUA 
                  GA AAGAUAGG UA GAGUAUUACAU AGGUAC GA     U
                  CU UUCUGUUU AU CUUGUAGUGUA UCCAUG CU     G
GGGUUACACAAACAAAGU  G^       C  U           U      C  UGUUU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-12_5p
mirBase accessionNone
Sequence 
0- UGAGUAUUACAUCAGGUACUGA -22
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Star sequence

Rph-Mir-12_3p*
mirBase accessionNone
Sequence 
36- CGUACCUUAUGUGAUGUUCUUA -58
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