MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-12
Paralogues
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pca-Mir-12-P12  Pca-Mir-12-P13  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Snu-Mir-12  Tur-Mir-12-P14  Tur-Mir-12-P15  War-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG3: 21686059-21686118 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12)		 Mir-12 LG3: 21686059-21686118 [-] Ensembl
Mir-216-P2 LG3: 21686284-21686342 [-] Ensembl
Mir-216-P1 LG3: 21690388-21690444 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCAUGUUUUGCAUUAAAAGUUCAGGGUUUGAGUAUUACAUCAGGUACUGGUUCGGUUUUGAAAAACCGGUCCCUGAGUAACACUUACAUUCUGGCUUUUAUCAUCGACGUAUAGUUUG
Get precursor sequence
Structure
        10           20        30        40        50          
UGGCAUGUUUUGCAUUA---|    U      U     A    A     U      UCGGUU 
                    AAAGU CAGGGU UGAGU UUAC UCAGG ACUGGU      \
                    UUUCG GUCUUA AUUCA AAUG AGUCC UGGCCA      U
GUUUGAUAUGCAGCUACUAU^    -      C     C    -     C      AAAAGU 
.       110       100         90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer site +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-12_5p
mirBase accessionMIMAT0008358
Sequence 
0- UGAGUAUUACAUCAGGUACUGGU -23
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Star sequence

Tca-Mir-12_3p*
mirBase accessionMIMAT0019102
Sequence 
38- CGGUCCCUGAGUAACACUUACA -60
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