MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-216-P1

Family name MIR-216 (all species)
Seed AAUAUCA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-283
Paralogues Tca-Mir-216-P2 
Orthologues Aae-Mir-216-P1  Aga-Mir-216-P1  Agr-Mir-216-P1  Asu-Mir-216-P1  Bge-Mir-216-P1  Cte-Mir-216-P1  Dan-Mir-216-P1  Dgr-Mir-216-P1  Dlo-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dpu-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Eba-Mir-216-P1  Efe-Mir-216-P1a  Efe-Mir-216-P1b  Esc-Mir-216-P1  Gpa-Mir-216-P1  Hme-Mir-216-P1  Hru-Mir-216-P1  Lan-Mir-216-P1e  Lan-Mir-216-P1f  Lgi-Mir-216-P1  Lhy-Mir-216-P1  Mgi-Mir-216-P1  Mom-Mir-216-P1  Ofu-Mir-216-P1  Pau-Mir-216-P1  Pca-Mir-216-P1  Pcr-Mir-216-P1  Pdu-Mir-216-P1  Pve-Mir-216-P1  Rph-Mir-216-P1  Sma-Mir-216-P1  Snu-Mir-216-P1  War-Mir-216-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(Tcas5.2)		 LG3: 21690388-21690444 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P1)		 Mir-12 LG3: 21686059-21686118 [-] Ensembl
Mir-216-P2 LG3: 21686284-21686342 [-] Ensembl
Mir-216-P1 LG3: 21690388-21690444 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUAUCAAAGGAUCAAUGGUUGUCUGUGAAAUAUCAGCUGGUAAUUCUGGGUUGAUGAGAUCCCAGAAUAUCGACUGAUAUUAUCAUAAACAACUGUACCGACCUCUCAGUAACA
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Structure
        10         20        30         40        50        
AUUUUAUCAAAGGAUCA-        C     -|       C     A       UUGA 
                  AUGGUUGU UGUGA AAUAUCAG UGGUA UUCUGGG    U
                  UGUCAACA AUACU UUAUAGUC GCUAU AAGACCC    G
ACAAUGACUCUCCAGCCA        A     A^       A     -       UAGA 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-216-P1_5p
mirBase accessionMIMAT0008387
Sequence 
0- AAAUAUCAGCUGGUAAUUCUGGG -23
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Star sequence

Tca-Mir-216-P1_3p*
mirBase accessionMIMAT0019127
Sequence 
35- CAGAAUAUCGACUGAUAUUAUC -57
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