MirGeneDB ID | Gpa-Mir-216-P1 |
Family name |
MIR-216 (all species) |
Seed |
AAUAUCA |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-216-P1
Aga-Mir-216-P1
Agr-Mir-216-P1
Asu-Mir-216-P1
Bge-Mir-216-P1
Cte-Mir-216-P1
Dan-Mir-216-P1
Dgr-Mir-216-P1
Dlo-Mir-216-P1
Dma-Mir-216-P1
Dme-Mir-216-P1
Dmo-Mir-216-P1
Dpu-Mir-216-P1
Dsi-Mir-216-P1
Dya-Mir-216-P1
Eba-Mir-216-P1
Efe-Mir-216-P1a
Efe-Mir-216-P1b
Esc-Mir-216-P1
Hme-Mir-216-P1
Hru-Mir-216-P1
Lan-Mir-216-P1e
Lan-Mir-216-P1f
Lgi-Mir-216-P1
Lhy-Mir-216-P1
Mgi-Mir-216-P1
Mom-Mir-216-P1
Ofu-Mir-216-P1
Pau-Mir-216-P1
Pca-Mir-216-P1
Pcr-Mir-216-P1
Pdu-Mir-216-P1
Pve-Mir-216-P1
Rph-Mir-216-P1
Sma-Mir-216-P1
Snu-Mir-216-P1
Tca-Mir-216-P1
War-Mir-216-P1
|
Node of Origin (locus) |
Nephrozoa
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Node of Origin (family) |
Nephrozoa
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Genome context (GpalI1) |
Scaffold19: 1470953-1471009 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUUUUUCUAAACGAAAGAAUUCUUAAAAAUAAAUAUCAGCUGGUAAUUCUGGGAUAUUUAUAACUCGGAAUUUCAGUUGGUAUAAAUUUUUCUGAAUUAAUUUUUUACAUCAUUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUUUUUCUAAACGAAAG--| UU AA U AUAU
AAUUC AAAAAU AUAUCAGCUGG AAUUCUGGG U
UUAAG UUUUUA UAUGGUUGACU UUAAGGCUC U
UUAUUACUACAUUUUUUAA^ UC AA - AAUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | No |
Tissue expression
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Mature sequence |
Gpa-Mir-216-P1_5p |
mirBase accession | None |
Sequence |
0- AAAUAUCAGCUGGUAAUUCUGGG -23
Get sequence
|
Star sequence |
Gpa-Mir-216-P1_3p* |
mirBase accession | None |
Sequence |
35- CGGAAUUUCAGUUGGUAUAAAU -57
Get sequence
|