Mir-216-P1

MirGeneDB ID

Dmo-Mir-216-P1

Family name

MIR-216 (all species)

Seed

AAUAUCA

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-283

Paralogues

Dmo-Mir-216-P2

Orthologues

Aae-Mir-216-P1 Aga-Mir-216-P1 Agr-Mir-216-P1 Asu-Mir-216-P1 Bge-Mir-216-P1 Cte-Mir-216-P1 Dan-Mir-216-P1 Dgr-Mir-216-P1 Dlo-Mir-216-P1 Dma-Mir-216-P1 Dme-Mir-216-P1 Dpu-Mir-216-P1 Dsi-Mir-216-P1 Dya-Mir-216-P1 Eba-Mir-216-P1 Efe-Mir-216-P1a Efe-Mir-216-P1b Esc-Mir-216-P1 Gpa-Mir-216-P1 Hme-Mir-216-P1 Hru-Mir-216-P1 Lan-Mir-216-P1e Lan-Mir-216-P1f Lgi-Mir-216-P1 Lhy-Mir-216-P1 Mgi-Mir-216-P1 Mom-Mir-216-P1 Ofu-Mir-216-P1 Pau-Mir-216-P1 Pca-Mir-216-P1 Pcr-Mir-216-P1 Pdu-Mir-216-P1 Pve-Mir-216-P1 Rph-Mir-216-P1 Sma-Mir-216-P1 Snu-Mir-216-P1 Tca-Mir-216-P1 War-Mir-216-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Nephrozoa

Genome context
(Dmoj_caf1)

scaffold_6359: 3257730-3257797 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P1)

Mir-216-P1 scaffold_6359: 3257730-3257797 [+] Ensembl
Mir-216-P2 scaffold_6359: 3259172-3259240 [+] Ensembl
Mir-12 scaffold_6359: 3259793-3259856 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CAGCUGUCACCUCACCCGAUUCUCAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCAAUGCCCAAUAUGAAACACUCGGAAUUUCAGUUGGUAUAUACUUUUUUGAAUUGCAUUUUAUCACCAAAGCG

Get precursor sequence

Structure

        10          20        30        40        50        60    
CAGCUGUCACCUCACCC--|    UC       A           U         AGCAAUGCCC 
                   GAUUC  AAAGGUA AUAUCAGCUGG AAUUCUGGG          \
                   UUAAG  UUUUCAU UAUGGUUGACU UUAAGGCUC          A
GCGAAACCACUAUUUUACG^    UU       A           -         ACAAAGUAUA 
      120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Em	Fe	Ma	Ma

Mature sequence

Dmo-Mir-216-P1_5p

mirBase accession

MIMAT0008640

Sequence

0- AAAUAUCAGCUGGUAAUUCUGGG -23

Get sequence

Star sequence

Dmo-Mir-216-P1_3p*

mirBase accession

None

Sequence

46- CGGAAUUUCAGUUGGUAUAUAC -68

Get sequence