MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-216-P1

Family name MIR-216 (all species)
Seed AAUAUCA
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues
Orthologues Aae-Mir-216-P1  Aga-Mir-216-P1  Agr-Mir-216-P1  Asu-Mir-216-P1  Bge-Mir-216-P1  Cte-Mir-216-P1  Dan-Mir-216-P1  Dgr-Mir-216-P1  Dlo-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dpu-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Eba-Mir-216-P1  Efe-Mir-216-P1a  Efe-Mir-216-P1b  Esc-Mir-216-P1  Gpa-Mir-216-P1  Hme-Mir-216-P1  Hru-Mir-216-P1  Lan-Mir-216-P1e  Lan-Mir-216-P1f  Lgi-Mir-216-P1  Lhy-Mir-216-P1  Mgi-Mir-216-P1  Mom-Mir-216-P1  Ofu-Mir-216-P1  Pau-Mir-216-P1  Pca-Mir-216-P1  Pcr-Mir-216-P1  Pdu-Mir-216-P1  Pve-Mir-216-P1  Rph-Mir-216-P1  Snu-Mir-216-P1  Tca-Mir-216-P1  War-Mir-216-P1 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601626.3: 9299589-9299642 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAACUGUCAAGAGCUCUUAUAAUGAAUAAAUAUCAGCUGGAAAAUCCAGUAGGGAGAAUGGAGUUUUUAUUUGAUAUUUCGGCCUACAUUUACCUCACUUCAAAGAUAGAC
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Structure
        10        20        30          40        50      
AAGAAACUGUCAAGAGCUCUUAUAAUGAAU--|        C      A    GUAG 
                                AAAUAUCAG UGGAAA UCCA    G
                                UUUAUAGUU AUUUUU AGGU    G
CAGAUAGAAACUUCACUCCAUUUACAUCCGGC^        U      G    AAGA 
  110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Mature sequence

Sma-Mir-216-P1_5p (predicted)
mirBase accessionNone
Sequence 
0- AAAUAUCAGCUGGAAAAUCCAG -22
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Star sequence

Sma-Mir-216-P1_3p* (predicted)
mirBase accessionNone
Sequence 
32- GGAGUUUUUAUUUGAUAUUUCG -54
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