Mir-216-P1

MirGeneDB ID

Sma-Mir-216-P1

Family name

MIR-216 (all species)

Seed

AAUAUCA

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-216-P1 Aga-Mir-216-P1 Agr-Mir-216-P1 Asu-Mir-216-P1 Bge-Mir-216-P1 Cte-Mir-216-P1 Dan-Mir-216-P1 Dgr-Mir-216-P1 Dlo-Mir-216-P1 Dma-Mir-216-P1 Dme-Mir-216-P1 Dmo-Mir-216-P1 Dpu-Mir-216-P1 Dsi-Mir-216-P1 Dya-Mir-216-P1 Eba-Mir-216-P1 Efe-Mir-216-P1a Efe-Mir-216-P1b Esc-Mir-216-P1 Gpa-Mir-216-P1 Hme-Mir-216-P1 Hru-Mir-216-P1 Lan-Mir-216-P1e Lan-Mir-216-P1f Lgi-Mir-216-P1 Lhy-Mir-216-P1 Mgi-Mir-216-P1 Mom-Mir-216-P1 Ofu-Mir-216-P1 Pau-Mir-216-P1 Pca-Mir-216-P1 Pcr-Mir-216-P1 Pdu-Mir-216-P1 Pve-Mir-216-P1 Rph-Mir-216-P1 Snu-Mir-216-P1 Tca-Mir-216-P1 War-Mir-216-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Nephrozoa

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601626.3: 9299589-9299642 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAACUGUCAAGAGCUCUUAUAAUGAAUAAAUAUCAGCUGGAAAAUCCAGUAGGGAGAAUGGAGUUUUUAUUUGAUAUUUCGGCCUACAUUUACCUCACUUCAAAGAUAGAC

Get precursor sequence

Structure

        10        20        30          40        50      
AAGAAACUGUCAAGAGCUCUUAUAAUGAAU--|        C      A    GUAG 
                                AAAUAUCAG UGGAAA UCCA    G
                                UUUAUAGUU AUUUUU AGGU    G
CAGAUAGAAACUUCACUCCAUUUACAUCCGGC^        U      G    AAGA 
  110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ce	Ce	Ce	Eg	Eg	Eg	Eg	Eg	Eg	Mi	Mi	Sc	Sc	Sc	Sm	Sm	Sp	Sp	Sp

Mature sequence

Sma-Mir-216-P1_5p (predicted)

mirBase accession

None

Sequence

0- AAAUAUCAGCUGGAAAAUCCAG -22

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Star sequence

Sma-Mir-216-P1_3p* (predicted)

mirBase accession

None

Sequence

32- GGAGUUUUUAUUUGAUAUUUCG -54

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