MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-216-P1

Family name MIR-216 (all species)
Seed AAUAUCA
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-283
Paralogues Asu-Mir-216-P2 
Orthologues Aae-Mir-216-P1  Aga-Mir-216-P1  Agr-Mir-216-P1  Bge-Mir-216-P1  Cte-Mir-216-P1  Dan-Mir-216-P1  Dgr-Mir-216-P1  Dlo-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dpu-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Eba-Mir-216-P1  Efe-Mir-216-P1a  Efe-Mir-216-P1b  Esc-Mir-216-P1  Gpa-Mir-216-P1  Hme-Mir-216-P1  Hru-Mir-216-P1  Lan-Mir-216-P1e  Lan-Mir-216-P1f  Lgi-Mir-216-P1  Lhy-Mir-216-P1  Mgi-Mir-216-P1  Mom-Mir-216-P1  Ofu-Mir-216-P1  Pau-Mir-216-P1  Pca-Mir-216-P1  Pcr-Mir-216-P1  Pdu-Mir-216-P1  Pve-Mir-216-P1  Rph-Mir-216-P1  Sma-Mir-216-P1  Snu-Mir-216-P1  Tca-Mir-216-P1  War-Mir-216-P1 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold36: 852176-852234 [+]
Clustered miRNAs
(< 50kb from Mir-216-P1)		 Mir-216-P1 Scaffold36: 852176-852234 [+]
Mir-216-P2 Scaffold36: 852366-852422 [+]
Precursor
(pre-Mir +30nt flank)
UGUAGCCGUCAGUUGAUGACUGCUCAAGGAGAAUAUCAGCAAGAUUGAUCUGGCUGUAUAUAAGUCCAGACCUAUCUGUCGAUAUUGCCUGCGGGCAGCUGCCUCUGCCUUAUUCCAAC
Get precursor sequence
Structure
        10          20         30        40        50         
UGUAGCCGUCAGUUGAUGA--      A-|  AG      A   A   UGA     CUGUA 
                     CUGCUC  AGG  AAUAUC GCA GAU   UCUGG     U
                     GACGGG  UCC  UUAUAG UGU CUA   AGACC     A
CAACCUUAUUCCGUCUCCGUC      CG^  G-      C   -   UCC     UGAAU 
       110       100        90         80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-216-P1_5p
mirBase accessionMIMAT0021519
Sequence 
0- GAAUAUCAGCAAGAUUGAUCUGG -23
Get sequence
Star sequence

Asu-Mir-216-P1_3p*
mirBase accessionMIMAT0021520
Sequence 
37- AGACCUAUCUGUCGAUAUUGCC -59
Get sequence