Mir-216-P1

MirGeneDB ID

Asu-Mir-216-P1

Family name

MIR-216 (all species)

Seed

AAUAUCA

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-283

Paralogues

Asu-Mir-216-P2

Orthologues

Aae-Mir-216-P1 Aga-Mir-216-P1 Agr-Mir-216-P1 Bge-Mir-216-P1 Cte-Mir-216-P1 Dan-Mir-216-P1 Dgr-Mir-216-P1 Dlo-Mir-216-P1 Dma-Mir-216-P1 Dme-Mir-216-P1 Dmo-Mir-216-P1 Dpu-Mir-216-P1 Dsi-Mir-216-P1 Dya-Mir-216-P1 Eba-Mir-216-P1 Efe-Mir-216-P1a Efe-Mir-216-P1b Esc-Mir-216-P1 Gpa-Mir-216-P1 Hme-Mir-216-P1 Hru-Mir-216-P1 Lan-Mir-216-P1e Lan-Mir-216-P1f Lgi-Mir-216-P1 Lhy-Mir-216-P1 Mgi-Mir-216-P1 Mom-Mir-216-P1 Ofu-Mir-216-P1 Pau-Mir-216-P1 Pca-Mir-216-P1 Pcr-Mir-216-P1 Pdu-Mir-216-P1 Pve-Mir-216-P1 Rph-Mir-216-P1 Sma-Mir-216-P1 Snu-Mir-216-P1 Tca-Mir-216-P1 War-Mir-216-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Nephrozoa

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold36: 852176-852234 [+]

Clustered miRNAs
(< 50kb from Mir-216-P1)

Mir-216-P1 Scaffold36: 852176-852234 [+]
Mir-216-P2 Scaffold36: 852366-852422 [+]

Precursor
(pre-Mir +30nt flank)

UGUAGCCGUCAGUUGAUGACUGCUCAAGGAGAAUAUCAGCAAGAUUGAUCUGGCUGUAUAUAAGUCCAGACCUAUCUGUCGAUAUUGCCUGCGGGCAGCUGCCUCUGCCUUAUUCCAAC

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Structure

        10          20         30        40        50         
UGUAGCCGUCAGUUGAUGA--      A-|  AG      A   A   UGA     CUGUA 
                     CUGCUC  AGG  AAUAUC GCA GAU   UCUGG     U
                     GACGGG  UCC  UUAUAG UGU CUA   AGACC     A
CAACCUUAUUCCGUCUCCGUC      CG^  G-      C   -   UCC     UGAAU 
       110       100        90         80         70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ce	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	La	Ov	Se	Sp	Te	Zy

Mature sequence

Asu-Mir-216-P1_5p

mirBase accession

MIMAT0021519

Sequence

0- GAAUAUCAGCAAGAUUGAUCUGG -23

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Star sequence

Asu-Mir-216-P1_3p*

mirBase accession

MIMAT0021520

Sequence

37- AGACCUAUCUGUCGAUAUUGCC -59

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