MirGeneDB 3.0

MirGeneDB ID

Dan-Mir-216-P1

Family name MIR-216 (all species)
Seed AAUAUCA
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-283
Paralogues Dan-Mir-216-P2 
Orthologues Aae-Mir-216-P1  Aga-Mir-216-P1  Agr-Mir-216-P1  Asu-Mir-216-P1  Bge-Mir-216-P1  Cte-Mir-216-P1  Dgr-Mir-216-P1  Dlo-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dpu-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Eba-Mir-216-P1  Efe-Mir-216-P1a  Efe-Mir-216-P1b  Esc-Mir-216-P1  Gpa-Mir-216-P1  Hme-Mir-216-P1  Hru-Mir-216-P1  Lan-Mir-216-P1e  Lan-Mir-216-P1f  Lgi-Mir-216-P1  Lhy-Mir-216-P1  Mgi-Mir-216-P1  Mom-Mir-216-P1  Ofu-Mir-216-P1  Pau-Mir-216-P1  Pca-Mir-216-P1  Pcr-Mir-216-P1  Pdu-Mir-216-P1  Pve-Mir-216-P1  Rph-Mir-216-P1  Sma-Mir-216-P1  Snu-Mir-216-P1  Tca-Mir-216-P1  War-Mir-216-P1 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Dana_caf1)
scaffold_12929: 2900402-2900470 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P1)
Mir-12 scaffold_12929: 2898590-2898653 [-] Ensembl
Mir-216-P2 scaffold_12929: 2899119-2899186 [-] Ensembl
Mir-216-P1 scaffold_12929: 2900402-2900470 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUCACCACCUCACCUGAUUCUUAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCUAUGCCUGAUUAUGAAACACUCGGAAUUUCAGUUGGUAUCGACUUUUUCGAAUUGCAUUUUAUCACCAAAAAC
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Structure
        10          20        30        40        50        60    
UGUUCACCACCUCACCU--|    UU      AA           U         AGCUAUGCCU 
                   GAUUC  AAAGGU  AUAUCAGCUGG AAUUCUGGG          G
                   UUAAG  UUUUCA  UAUGGUUGACU UUAAGGCUC          A
CAAAAACCACUAUUUUACG^    CU      GC           -         ACAAAGUAUU 
       120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fe
Mature sequence

Dan-Mir-216-P1_5p

mirBase accessionMIMAT0008437
Sequence
0- AAAUAUCAGCUGGUAAUUCUGGG -23
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Star sequence

Dan-Mir-216-P1_3p*

mirBase accessionNone
Sequence
47- CGGAAUUUCAGUUGGUAUCGAC -69
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