MirGeneDB 3.0

MirGeneDB ID

Aae-Mir-216-P1

Family name MIR-216 (all species)
Seed AAUAUCA
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-283
Paralogues Aae-Mir-216-P2 
Orthologues Aga-Mir-216-P1  Agr-Mir-216-P1  Asu-Mir-216-P1  Bge-Mir-216-P1  Cte-Mir-216-P1  Dan-Mir-216-P1  Dgr-Mir-216-P1  Dlo-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dpu-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Eba-Mir-216-P1  Efe-Mir-216-P1a  Efe-Mir-216-P1b  Esc-Mir-216-P1  Gpa-Mir-216-P1  Hme-Mir-216-P1  Hru-Mir-216-P1  Lan-Mir-216-P1e  Lan-Mir-216-P1f  Lgi-Mir-216-P1  Lhy-Mir-216-P1  Mgi-Mir-216-P1  Mom-Mir-216-P1  Ofu-Mir-216-P1  Pau-Mir-216-P1  Pca-Mir-216-P1  Pcr-Mir-216-P1  Pdu-Mir-216-P1  Pve-Mir-216-P1  Rph-Mir-216-P1  Sma-Mir-216-P1  Snu-Mir-216-P1  Tca-Mir-216-P1  War-Mir-216-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(Aaeg_L3)
supercont1.68: 2729347-2729416 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P1)
Mir-12 supercont1.68: 2720399-2720490 [-] Ensembl
Mir-216-P2 supercont1.68: 2720796-2720917 [-] Ensembl
Mir-216-P1 supercont1.68: 2729347-2729416 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGCAAAAAAAAAGGUUCGACUGAAAGGUCAAUAUCAGCUGGUAAUUCUGGGCUUACCCCACCGUUAUACGCUUCCCGGAAUUCCAACUGAUAUCCACUUUUUAGUCGAGAUGGUCAAAAUUGUUCACC
Get precursor sequence
Structure
        10           20        30        40        50        60    
AAAGCAAAAAAAAAGGU---|            CA       C   U         CUUACCCCAC 
                    UCGACUGAAAGGU  AUAUCAG UGG AAUUCUGGG          C
                    AGCUGAUUUUUCA  UAUAGUC ACC UUAAGGCCC          G
CCACUUGUUAAAACUGGUAG^            CC       A   -         UUCGCAUAUU 
.       120       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThis might be a Group 2 miRNA but as the U is genomically encoded it is not possible to discriminate between the two.
3' NTU No
MotifsNo
Tissue expression
 +
Ge Ge So So To To To
Mature sequence

Aae-Mir-216-P1_5p

mirBase accessionMIMAT0014279
Sequence
0- CAAUAUCAGCUGGUAAUUCUGGG -23
Get sequence
Star sequence

Aae-Mir-216-P1_3p*

mirBase accessionNone
Sequence
47- CGGAAUUCCAACUGAUAUCCACU -70
Get sequence