MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-12-P10

Family name MIR-12 (all species)
Seed GAGUAUU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2157
Paralogues Sme-Mir-12-P9  Sme-Mir-12-P11 
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Snu-Mir-12  Tca-Mir-12  War-Mir-12 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000085_dd_Smes_g4_85: 414521-414575 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12-P10)		 Mir-216-P2e NNSW01000085_dd_Smes_g4_85: 414251-414315 [+] UCSC Ensembl
Mir-12-P10 NNSW01000085_dd_Smes_g4_85: 414521-414575 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGUACAAACUUAAAGGUGCAGUCAAAUUUUGAGUAUUGCAUCAAGAACCGAAUGUUAAUAUCAGUUUUUGAUGAAUUACUUAAAUUAAGCUCCUCUAAUCUCUUAUUUAUUAUA
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Structure
        10        20           30        40        50       
UAGUACAAACUUAAAGGUGC---|  CAAAU        UUG          C  AUGU 
                       AGU     UUUGAGUA   CAUCAAGAAC GA    \
                       UCG     AAAUUCAU   GUAGUUUUUG CU    U
AUAUUAUUUAUUCUCUAAUCUCC^  AAUU-        UAA          A  AUAA 
   110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-12-P10_5p
mirBase accessionMIMAT0011250
Sequence 
0- UGAGUAUUGCAUCAAGAACCGA -22
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Star sequence

Sme-Mir-12-P10_3p*
mirBase accessionMIMAT0012148
Sequence 
33- AGUUUUUGAUGAAUUACUUAAA -55
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